This was fixed in 7.11. You can use that version or copy the attached file to this location $FREESURFER_HOME/matlab/freesurfer_read_surf.m
On 5/11/2021 2:28 PM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote:
Hi,
I am using Matlab R2014a, and FS7.1.0
and receiving this error when I try to run -localGI. Is there a package I might be missing? Or am I using an outdated version of Matlab?
================= mris_smooth -nw -n 30 /mnt/V/Datasets/BSNIP2/Processing/Finished/24015_S5437DFD_ASSET/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 61554 - 184656 + 123104 = 2 --> 0 holes F =2V-4: 123104 = 123108-4 (0) 2E=3F: 369312 = 369312 (0)
total defect index = 0
mris_convert -n lh.pial-outer-smoothed /mnt/V/Datasets/BSNIP2/Processing/Finished/24015_S5437DFD_ASSET/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/mnt/V/Datasets/BSNIP2/Processing/Finished/24015_S5437DFD_ASSET/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrc_30700_.m'); exit =================
< M A T L A B (R) > Copyright 1984-2014 The MathWorks, Inc. R2014a (8.3.0.532) 64-bit (glnxa64) February 11, 2014 .
.
.
To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com.
Warning: Input argument must be a string.
In ver at 41
In freesurfer_read_surf at 70 In find_corresponding_center_FSformat at 26 Error using fprintf Function is not defined for 'struct' inputs.
Error in freesurfer_read_surf (line 70) fprintf('FREESURFER_READ_SURF [v %s]\n',ver(11:15));
Error in find_corresponding_center_FSformat (line 26) [mesh_pial.vertices, mesh_pial.faces] = freesurfer_read_surf(pial);
ERROR: find_corresponding_center_FSformat did not complete successfully! Command exited with non-zero status 1 @#@FSTIME 2021:05:11:17:18:12 mris_compute_lgi N 2 e 31.58 S 6.20 U 53.23 P 188% M 1319608 F 0 R 1468406 W 0 c 71733 w 7023 I 8832 O 30496 L 17.98 17.99 18.00 @#@FSLOADPOST 2021:05:11:17:18:44 mris_compute_lgi N 2 17.35 17.83 17.95 Linux Gamma 3.16.0-4-amd64 #1 SMP Debian 3.16.7-ckt25-2+deb8u3 (2016-07-02) x86_64 GNU/Linux
recon-all -s 24015_S5437DFD_ASSET exited with ERRORS at Tue May 11 17:18:44 EDT 2021
For more details, see the log file /mnt/V/Datasets/BSNIP2/Processing/Finished/24015_S5437DFD_ASSET/scripts/recon-all.log To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab --
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