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and what about the 0's showing up in labels?
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Monday, August 27, 2018 11:04:01 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Parcellation labels error
Neither the aparc nor the aparc.DKTatlas have corpus callosum labeled. It is labled in the aseg.mgz though
On 08/27/2018 10:24 AM, Ali,Mohamed Tarek Mohamed wrote:
External Email - Use CautionHello FreeSurfer Developers,
While I am using [vec,labels,cnames] = read_annotation('lh.aparc.annot'), I am getting values in labels which are not found in cnames.table(:,5). These values are 0. I assigned the values to the unknown area. However, when I looked at the number of vertices per brain regions I found that corpuscallosum has no vertices in the DK atlas.
This is my first week using a neuroimaging software and Freesurfer is my first software to work on, so I just don't know if that's ok or if there is something wrong.
I am attaching the output of a python code I wrote to count the number of vertices per brain region in the left hemisphere of a structural MRI image from our dataset.
Thanks in advance,
*Mohamed T. Ali*
*Ph.D. student, Bioengineering,*
*University of Louisville.*
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