Dear freesurfer users,
I have an unexpected error using autorecon1. The error occurred during the skull stripping process of a person called PTpost_P04.
First I tried: recon-all autorecon1 s PTpost_P04 After the first error (recon-all -s PTpost_P04 exited with ERRORS) I checked the logfile and tried the following: cd /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/freesurfer/PTpost_P04/mri
followed directly by: mri_watershed -keep brainmask.auto.mgz brainmask.mgz brainmask.mgz -T1 -brain_atlas /opt/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz
I became the error message: could not read 65536 bytes at slice 76
The information about the freesurfer version and linux version used are: FREESURFER_HOME: /opt/freesurfer Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 Kernel info: Linux 2.6.34.10-0.6-default x86_64
It would be great if anybody could help me in solving this.
Best regards Sandra
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