Re: [Freesurfer] mri_glmfit error with aparc table flag

Thank very much Doug. Also, I was looking into the annotval2surfoverlay file and I have couple of questions. % Run these commands in matlab % annotnames = strvcat('superiortemporal','insula','postcentral'); % annotvals = [1.1 2.2 3.7]; % annotfile = '~/paul_analysis/fsaverage/label/lh.aparc.annot'; % surfoverlay = annotval2surfoverlay(annotvals,annotnames,annotfile); % clear mri % mri.vol = surfoverlay; % MRIwrite(mri,'vals.mgh'); % 1) Correct me if I am wrong, the annotation values (annotvals) are from results after correcting for multiple comparisons using mri_fdr? 2) Is this correct way to add octave path to freesurfer's path?

setenv FS_USE_OCTAVE 4.0.3

setenv FS_OCTAVE_LIB /Applications/octave/lib setenv FS_OCTAVE_BIN /Application/octave/binary

Thanks,

Best,

Paul

On Thu, Apr 20, 2017 at 10:55 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu

wrote:

you can get it here

https://gate.nmr.mgh.harvard.edu/safelinks/greve/annotval2surfoverlay.m

On 04/20/2017 10:10 AM, miracle ozzoude wrote:

...

Hello Doug, I downloaded and installed octave. However, I can't find the annotval2surfoverlay.m file in the matlab directory of freesurfer. Does it come with FS v6 or do i need to download the file? Also, I was looking into the annotval2surfoverlay file and I have couple of questions. % Run these commands in matlab % annotnames = strvcat('superiortemporal','insula','postcentral'); % annotvals = [1.1 2.2 3.7]; % annotfile = '~/subjects/fsaverage/label/lh.aparc.annot'; % surfoverlay = annotval2surfoverlay(annotvals,annotnames,annotfile); % clear mri % mri.vol = surfoverlay; % MRIwrite(mri,'vals.mgh'); %

1. Are the annotation values (annotvals) from results after correcting

for multiple comparisons using mri_fdr? 2) Do I need to add octave path to freesurfer PATH like the example below? setenv FS_USE_OCTAVE 4.0.3

setenv FS_OCTAVE_LIB /Applications/octave/lib setenv FS_OCTAVE_BIN /Application/octave/binary

On Wed, Apr 19, 2017 at 3:39 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

I think that will work


On 04/19/2017 03:33 PM, miracle ozzoude wrote:
> Hello Doug,
> Do you think writing the script with octave can substitute for
matlab?
> I am using FS v6.0 and I have the annotval2surfoverlay.m. Thanks
> Best,
> Paul
>
> On Wed, Apr 19, 2017 at 1:47 PM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>> wrote:
>
>     Sorry, I don't have another solution for you.
>
>
>     On 04/19/2017 01:42 PM, miracle ozzoude wrote:
>     > Thanks Doug. However, I am running freesurfer analysis on my
>     personal
>     > computer and I don't have matlab. Also, I don't know how
this matlab
>     > script works/ matlab works. Any instructions on how to use
it or
>     > alternate? Please and thank you.
>     > Best,
>     > Paul.
>     >
>     > On Wed, Apr 19, 2017 at 1:33 PM, Douglas N Greve
>     > <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

...

>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>     >
>     >     It is a table of data, so you can't visualize it
directly on
>     anything.
>     >     You can try using annotval2surfoverlay.m to create a
surface
>     >     overlay of
>     >     the data.
>     >
>     >
>     >     On 04/19/2017 10:05 AM, miracle ozzoude wrote:
>     >     > Hello Doug,
>     >     > It worked. The issue was due to formatting error
with the
>     aparc
>     >     file.
>     >     > Also, I was trying to visualize the result on the
surface
>     using
>     >     > freeview -f fsaverage/lh.pial -viewport 3d (clicking
>     overlay on
>     >     > freeview and loading the sig.mgh). However, i got an
error "
>     >     failed to
>     >     > display overlay". How can I visualize the result?

Thanks

...

>     >     > Best,
>     >     > Paul
>     >     >
>     >     > On Tue, Apr 18, 2017 at 10:03 PM, Douglas Greve
>     >     > <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

...

...

>     >     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
>     >     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
>     >     >
>     >     >     You have a table of data, so no template is
needed. If you
>     >     put the
>     >     >     --surf before the --table, it probably runs, but it
>     will ignore
>     >     >     the surface
>     >     >
>     >     >
>     >     >     On 4/18/17 9:58 PM, miracooloz@gmail.com
<mailto:miracooloz@gmail.com>
>     <mailto:miracooloz@gmail.com <mailto:miracooloz@gmail.com>>
>     >     <mailto:miracooloz@gmail.com
<mailto:miracooloz@gmail.com> <mailto:miracooloz@gmail.com
<mailto:miracooloz@gmail.com>>>
>     >     >     <mailto:miracooloz@gmail.com
<mailto:miracooloz@gmail.com> <mailto:miracooloz@gmail.com
<mailto:miracooloz@gmail.com>>
>     <mailto:miracooloz@gmail.com <mailto:miracooloz@gmail.com>
<mailto:miracooloz@gmail.com <mailto:miracooloz@gmail.com>>>> wrote:
>     >     >>     Thanks doug. Does it mean when using the --table
>     flag, you
>     >     can't
>     >     >>     use the fsaverage template? I came across several
>     post in the
>     >     >>     forum that used "--surf fsaverage lh "‎ and it
worked.
>     >     >>     Best,
>     >     >>     Paul
>     >     >>
>     >     >>     Sent from my BlackBerry 10 smartphone.
>     >     >>     *From: *Douglas Greve
>     >     >>     *Sent: *Tuesday, April 18, 2017 9:52 PM
>     >     >>     *To: *freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
>     <mailto:freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>>
>     >     <mailto:freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
>     <mailto:freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>>>
>     >     >>     <mailto:freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
>     <mailto:freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>>
>     >     <mailto:freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
>     <mailto:freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>>>>
>     >     >>     *Reply To: *Freesurfer support list
>     >     >>     *Subject: *Re: [Freesurfer] mri_glmfit error
with aparc
>     >     table flag
>     >     >>
>     >     >>
>     >     >>     Don't include --surf fsaverage lh. It thinks the
>     input is a
>     >     >>     surface, not a table
>     >     >>
>     >     >>
>     >     >>
>     >     >>     On 4/18/17 9:21 PM, miracle ozzoude wrote:
>     >     >>>     Hello freesurfer,
>     >     >>>     I am trying to run mri_glmfit with the --table
flag. My
>     >     >>>  aparc_lh_thick_stats.txt contain entorhinal and
>     >     parahippocampal
>     >     >>>     thickness values for 32 subjects. I ran the glm
>     command and
>     >     >>>     received an error. Please, how can i solve this
>     issue? I have
>     >     >>>     included my command, fsgd file, contrast
matrix and
>     error
>     >     below.
>     >     >>>     Thanks
>     >     >>>     Best,
>     >     >>>     Paul
>     >     >>>
>     >     >>>     GLM command: mri_glmfit --table
aparc_lh_thick_stats.txt
>     >     --fsgd
>     >     >>>     age.fsgd --C age1.mtx --C age2.mtx --surf
fsaverage lh
>     >     --cortex
>     >     >>>     --glmdir lh.thickness.glmdir
>     >     >>>
>     >     >>>
>     >     >>>     ERROR= "gdfRead(): reading age.fsgd
>     >     >>>
>     >     >>>     INFO: DeMeanFlag keyword not found, DeMeaning

will

...

>     NOT be
>     >     done.
>     >     >>>
>     >     >>>     Continuous Variable Means (all subjects)
>     >     >>>
>     >     >>>     0 Age 39.9375 17.3312
>     >     >>>
>     >     >>>     Class Means of each Continuous Variable
>     >     >>>
>     >     >>>     1 Group1  35.6316
>     >     >>>
>     >     >>>     2 Group2  46.2308
>     >     >>>
>     >     >>>     INFO: gd2mtx_method is dods
>     >     >>>
>     >     >>>     Reading source surface
>     >     >>>
>     >
>
 /Users/MiracleOz/Documents/improvervsdeclinermri/

fsaverage/surf/lh.white

...

>     >     >>>
>     >     >>>     Number of vertices 163842
>     >     >>>
>     >     >>>     Number of faces 327680
>     >     >>>
>     >     >>>     Total area 65416.984375
>     >     >>>
>     >     >>>     AvgVtxArea  0.399269
>     >     >>>
>     >     >>>     AvgVtxDist  0.721953
>     >     >>>
>     >     >>>     StdVtxDist  0.195470
>     >     >>>
>     >     >>>
>     >     >>>     $Id: mri_glmfit.c,v 1.241.2.4 2016/12/08 22:02:40
>     zkaufman
>     >     Exp $
>     >     >>>
>     >     >>>     cwd
/Users/MiracleOz/Documents/improvervsdeclinermri
>     >     >>>
>     >     >>>     cmdline mri_glmfit.bin --table
>     aparc_lh_thick_stats.txt --fsgd
>     >     >>>     age.fsgd --C age1.mtx --C age2.mtx --surf
fsaverage lh
>     >     --cortex
>     >     >>>     --glmdir lh.thickness.glmdir
>     >     >>>
>     >     >>>     sysname Darwin
>     >     >>>
>     >     >>>     hostname MacBook-Pro.local
>     >     >>>
>     >     >>>     machine x86_64
>     >     >>>
>     >     >>>     user     MiracleOz
>     >     >>>
>     >     >>>     FixVertexAreaFlag = 1
>     >     >>>
>     >     >>>     UseMaskWithSmoothing    1
>     >     >>>
>     >     >>>     OneSampleGroupMean 0
>     >     >>>
>     >     >>>     y
>     >     >>>
>     >
>
 /Users/MiracleOz/Documents/improvervsdeclinermri/aparc_

lh_thick_stats.txt

...

>     >     >>>
>     >     >>>     logyflag 0
>     >     >>>
>     >     >>>     usedti 0
>     >     >>>
>     >     >>>     FSGD age.fsgd
>     >     >>>
>     >     >>>     labelmask
>     >     >>>
>     >
>
 /Users/MiracleOz/Documents/improvervsdeclinermri/

fsaverage/label/lh.cortex.label

...

>     >     >>>
>     >     >>>     maskinv 0
>     >     >>>
>     >     >>>     glmdir lh.thickness.glmdir
>     >     >>>
>     >     >>>     IllCondOK 0
>     >     >>>
>     >     >>>     ReScaleX 1
>     >     >>>
>     >     >>>     DoFFx 0
>     >     >>>
>     >     >>>     Creating output directory lh.thickness.glmdir
>     >     >>>
>     >     >>>     Loading y from
>     >     >>>
>     >
>
 /Users/MiracleOz/Documents/improvervsdeclinermri/aparc_

lh_thick_stats.txt

...

>     >     >>>
>     >     >>>     Found 66 data colums
>     >     >>>
>     >     >>>     Found 0 data rows
>     >     >>>
>     >     >>>     INFO: gd2mtx_method is dods
>     >     >>>
>     >     >>>     Saving design matrix to

lh.thickness.glmdir/Xg.dat

...

>     >     >>>
>     >     >>>     Computing normalized matrix
>     >     >>>
>     >     >>>     Normalized matrix condition is 32.2165
>     >     >>>
>     >     >>>     Matrix condition is 20734.7
>     >     >>>
>     >     >>>     Found 149955 points in label.
>     >     >>>
>     >     >>>     ERROR: mri_reshape: number of elements cannot
change
>     >     >>>
>     >     >>>     nv1 = 163842, nv1 = 66
>     >     >>>
>     >     >>>     search space = 82219.962936
>     >     >>>
>     >     >>>     ERROR: dimension mismatch between y and X.
>     >     >>>
>     >     >>>       y has 0 inputs, X has 32 rows."
>     >     >>>
>     >     >>>     FSGD file: GroupDescriptorFile 1
>     >     >>>
>     >     >>>     Title MOT
>     >     >>>
>     >     >>>     Class Group1
>     >     >>>
>     >     >>>     Class Group2
>     >     >>>
>     >     >>>     Variables Age
>     >     >>>
>     >     >>>     Input 01053p Group1 23
>     >     >>>
>     >     >>>     Input 01054p Group1 43
>     >     >>>
>     >     >>>     Input 01061p Group2 39
>     >     >>>
>     >     >>>     Input 01062p Group2 19
>     >     >>>
>     >     >>>     Input 01074p Group2 28
>     >     >>>
>     >     >>>     .............. (I have more participants)
>     >     >>>
>     >     >>>
>     >     >>>     CONTRAST MATRIX: 1 -1 0 0
>     >     >>>
>     >     >>>
>     >     >>>
>     >     >>>  _______________________________________________
>     >     >>>     Freesurfer mailing list
>     >     >>> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >     >>>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
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>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
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>     >     > _______________________________________________
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>     >     > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >     <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:

Freesurfer@nmr.mgh.harvard.edu>

...

>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>     >     >
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >     --
>     >     Douglas N. Greve, Ph.D.
>     >     MGH-NMR Center
>     > greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

...

>     <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

...

...

>     >     Phone Number:617-724-2358 <tel:617-724-2358> <tel:

617-724-2358 tel:617-724-2358>

...

>     <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
<tel:617-724-2358>>>
>     >     Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422
<tel:617-726-7422>> <tel:617-726-7422 <tel:617-726-7422>
>     <tel:617-726-7422 <tel:617-726-7422>>>
>     >
>     >     Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     >     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>>
>     >     FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
>     >     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>>
>     > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     >
 <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>>
>     >     Outgoing:
>     >
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>     >
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>>
>     >     _______________________________________________
>     >     Freesurfer mailing list
>     > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:

Freesurfer@nmr.mgh.harvard.edu>

...

>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>
 >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>     >
>
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
>     >
>     >
>     >
>     >
>     > _______________________________________________
>     > Freesurfer mailing list
>     > Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
>     <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
>     >
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>
>     --
>     Douglas N. Greve, Ph.D.
>     MGH-NMR Center
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu

...

>     Phone Number: 617-724-2358 <tel:617-724-2358>
<tel:617-724-2358 <tel:617-724-2358>>
>     Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422
<tel:617-726-7422>>
>
>     Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>     <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
>     FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
>     <https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>>
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>     <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
>     Outgoing:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
 <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>
>
>     _______________________________________________
>     Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
<mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
 <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
<https://gate.nmr.mgh.harvard.edu/filedrop2>
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
Outgoing:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.

harvard.edu>

...

https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer