Re: [Freesurfer] Viewing nifti file in freeview

Hi Amanda

sometimes freeview doesn't do a good job setting the window levels. Try changing them manually, or draw a box with shift-middle mouse (it will show in green)

cheers Bruce On Thu, 4 Feb 2016, Worker, Amanda wrote:

Hi All,

I was hoping someone could help with an issue that I'm having that I'm sure has a simple explanation. I have a proton density map in nifti format that I am trying to convert to mgz using mri_convert.

However,  when I load the original nifti file into freeview, I get a blank screen and the same when I try to load the converted .mgz - but I have no issue with loading this file into fslview. Other nifti and .mgz files are also loading fine into freeview.

Has anyone seen this problem before?

Thanks,

Amanda