not really. If you're running on a cluster, sometimes there can be communication issues where it can only read part of a file, but that is just a wild guess
On 10/13/17 12:44 PM, Keiko McCreary wrote:
Hi Doug!
I just ran the mris_anatomica_stats on its own- and it ran successfully? Do you know what may have caused it to fault?
Thank you very much! Keiko
On Fri, Oct 13, 2017 at 12:17 PM, Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
Does this happen repeatedly? You don't have to rerun recon-all again, just that last mris_anatomical_stats command to see if it seg faults again. If it does, first check your disk space, then load the left hemi in freeview along with the annot and the cortex.label On 10/13/17 11:05 AM, Keiko McCreary wrote:Hello Freesurfer developers, After succesfully running two recon-all's (error free), the third failed during mri_anatomical_stats. Any help would be appreciated (I am new to freesurfer). I found this error reported but not when recon-all has already successfully ran. Linux xubuntu-virtual box Freesurfer v5.3 recon-all.log is attached Thank you, Keiko _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline <http://www.partners.org/complianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.-- J. Keiko McCreary, PhD Postdoctoral Fellow SARTAN-AD Clinical Research Coordinator (Lethbridge Site) Canadian Centre for Behavioural Neuroscience University of Lethbridge Office: EP 1218 Phone: 403-394-3985 Cell: 403-393-0181 keiko.mccreary2@uleth.ca mailto:keiko.mccreary2@uleth.ca or @gmail.com http://gmail.com
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