can you send the full terminal output?
On 04/05/2017 04:02 PM, Taylor, Johnmark wrote:
Hello,
I am getting an odd bug on selxavg3-sess. I am getting the error message,
*ERROR: cannot find [rest of file path]/fmc.sm0*
I am indicating zero smoothing in mkanalysis-sess ("-fwhm 0"). I am confused because the output of preproc-sess for no smoothing is fmc.nii.gz, *NOT *fmc.sm0.nii.gz when doing analyses in native volume space, so I am not sure why selxavg-sess is looking for the wrong file path. For reference, here is my call to mkanalysis-sess:
mkanalysis-sess -analysis analysis_name -fsd bold -runlistfile runlist.txt -native -nuisreg mcextreg 3 -fwhm 0 -event-related -nconditions 8 -paradigm spiralpara.par -spmhrf 0 -refeventdur 12 -TR 1.5 -polyfit 2 -nskip 8
I am using Freesurfer 5.3, if that helps. The analysis works fine when I apply 3mm smoothing (I've done preprocessing for both the 0mm and 3mm options).
Thank you very much, and cheers,
JohnMark
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer