External Email - Use Caution
Hi Juan,
My email response to you has the attachments of the log files, but it once again is being held for moderator approval. Not sure how often or who checks it, but my last few emails are there waiting 🙂
Thank you again for your help. Hopefully, the email can be approved with the log files so they can be reviewed.
Lisa ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Wednesday, December 8, 2021 1:00 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Hippocampal Subfield data not populating
Dear Lisa, It’s difficult to tell without seeing the logs, but it seems like you ran out of RAM memory? Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://secure-web.cisco.com/1sNxoZ5Oy64QvlP-IJ_xchsLgpk3s4tD-j00cjSUwEW380zH...https://secure-web.cisco.com/1rhicNpMnyP7TNZgTZPYU6Dz2K8GgebAwxRX5POw1j5ie8XMNSbhydwe3ZZnoLhHaxo3ZDCOxvx-bo88EJTocbgVBGsTil14gqJtdwY0Jubf9LZn5mVNi_YPy0icUssmQcVdwV6d5DD5nLZho7Bl3m83CSazhGzKmwCcVeUNNzpydsYJ1-zxvPgFgK9ALC3Q7E0QHhb95p17uUATKECyNiqCj5DZDbWRjdjwBQGPzYqKwNBaCOrij9zL0IaHQsYX-oKHrDGqVbGw70sQ31G8YbvLxPLEd6hcw4G7NbhEJRnwyzjGIA3xQYSj_5wnjfLb_/https%3A%2F%2Furldefense.com%2Fv3%2F__http%3A%2F%2Fwww.jeiglesias.com__%3B%21%21OLgoXmg%21Bk3d3AdL3kcsK-4SYxHmwBqEccK3wF9ULrNZV2Hun_8hJvh279oie4WhXA46alLElsY%24
On Dec 8, 2021, at 15:57, Taylor, Lisa <ltaylor2@hs.uci.edumailto:ltaylor2@hs.uci.edu> wrote:
External Email - Use Caution
Hi,
Sorry if this email has been seen. I got an automatic response that my previous emails were in the queue waiting to be approved due to the email size, but haven't seen an approval yet. So, I am trying again without the email attachments (both recon all and hippocampal subfield log files) to see if it might be more efficient this way.
Running the hippocampal-subfields-T1 argument for some reason is not populating the data I need. My recon-all log says it was exited without error, and my hippocampal subfield log file seems to have run smoothly except for this one line that I am not sure is telling or not:
/data/opt/apps/freesurfer/6.0.1/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 46: 2066 Killed "${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML $args
Please advise!
Thank you.
Lisa
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