Thanks the problem is resolved now. ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Das S. [Sarbani.Das@soton.ac.uk] Sent: 21 April 2017 15:47 To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] mris_label2annot not creating annot file
Hi, I was using the mris_label2annot to create .annot file before but now couldn't figure out why the .annot file is not being created. The mris_label2annot is giving the below output but not creating the label files. My label file names are as node-lh-xx.label and the content of ctab file as below:
0 node-lh-0 25 5 25 0 1 node-lh-1 70 0 180 0 2 node-lh-2 245 245 245 0 3 node-lh-3 205 62 78 0 4 node-lh-4 120 18 134 0 5 node-lh-5 196 58 250 0 6 node-lh-6 0 148 0 0 7 node-lh-7 220 248 164 0 8 node-lh-8 230 148 34 0 9 node-lh-9 0 118 14 0 10 node-lh-10 70 118 14 0 11 node-lh-11 122 186 220 0 12 node-lh-12 236 13 176 0 13 node-lh-13 12 48 255 0 14 node-lh-14 204 182 142 0
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mris_label2annot --s 100307 --h lh --no-unknown --ctab label/eq_parcellation_label/MyColorLUTleft01.txt --a eq40left --ldir label/eq_parcellation_label/left/ Reading ctab label/eq_parcellation_label/MyColorLUTleft01.txt Number of ctab entries 41 INFO: no labels specified, generating from ctab
$Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /home/koushik/Parcellation/100307 cmdline mris_label2annot --s 100307 --h lh --no-unknown --ctab label/eq_parcellation_label/MyColorLUTleft01.txt --a eq40left --ldir label/eq_parcellation_label/left/ sysname Linux hostname koushik-DQ77MK machine x86_64 user koushik
subject 100307 hemi lh SUBJECTS_DIR /home/koushik/Parcellation ColorTable label/eq_parcellation_label/MyColorLUTleft01.txt AnnotName eq40left nlables 0 LabelThresh 0 0.000000 Loading /home/koushik/Parcellation/100307/surf/lh.orig Writing annot to /home/koushik/Parcellation/100307/label/lh.eq40left.annot
Thanks Sarbani
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