27 Jun
2014
27 Jun
'14
1:17 p.m.
Hi Teo, Yes it does, but you can use the -no-wsgcaatlas flag. You can also try using gcut which doesn't use an atlas (almost certain).
Link with skullstripping info: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/SkullStripFix_freeview
-Louis
On Fri, 27 Jun 2014, Teo Gelles wrote:
Hi Everyone,
I am trying to skullstrip an mri image without using an atlas. Does the following command use an atlas at any point? If so, is there a way to run the skullstripping algorithm without using information from an atlas?
recon-all -s bert/ -clean-bm -skullstrip
Thanks.
Teo Gelles