On 9/2/13 12:02 PM, "Glasser, Matthew" glasserm@wusm.wustl.edu wrote:
Hi Bruce,
Connectome Workbench commandline utilities can do this with FSL warp fields:
wb_command -surface-apply-warpfield
One needs to use the inverse warp as the <warpfield> argument and the forward warp as the -fnirt <forward-warp>.
Peace,
Matt.
On 9/2/13 11:19 AM, "Bruce Fischl" fischl@nmr.mgh.harvard.edu wrote:
A veritable game of telephone! Thanks Jesper. Matt?
On Mon, 2 Sep 2013, Jesper Andersson wrote:
Hi guys, I didn't think we had any tools for doing that, and said so much on the FSL mailbase. But apparently the WashU people has something that does just that for you. I think the best person to contact about the details is Matt Glasser.
J
On 2 Sep 2013, at 15:58, Saad Jbabdi saad@FMRIB.OX.AC.UK wrote:
Hi In Probtrackx, this is done internally.If you just want to transform the vertex coordinates, then I think you'll need to play with the FNIRT source code - I've CC'd Jesper who knows better.
Cheers, Saad
On 2 Sep 2013, at 15:56, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
you might check on the FSL list. I think I've seen some traffic indicating that there are some tools for doing this. I'l cc Saad as he might know cheers Bruce On Mon, 2 Sep 2013, Douglas Greve wrote: Hi Shani, I don't think you can apply a FNIRT transform to a surface. doug On 9/2/13 8:20 AM, Shani Ben Amitay wrote: Dear freesurfer people, Any idea whether I can apply transformation that was calculated by fsl fnirt on the white/pial surfaces calculated using the freesurfer stream? Thanks! Shani _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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