Dear Antao,
Check the recent archives with the subject "make_average_subject error?" and
the recent exchange with Nick. On Doug's advice, I added 'xv' to the
beginning of each make_average* script
So,
#!/bin/tcsh -efxv
Instead of #!/bin/tcsh -ef
This produced the output that allowed the freesurfer developers to pinpoint
the error. Also on Doug's suggestion, try adding --debug to the
make_average_subject command.
Nick's recommendation a few posts ago fixed the problem that I was having on
a fedora core 4 machine. Based on your initial post, we seem to have similar
problems, so give the above suggestions a try. If needed, comment out the
offending information in make_average_subject, make_average_volume, and
make_average_surface as Nick suggested (if you receive the same error
message that I received).
Good luck.
Brian
--
Brian C. Schweinsburg, Ph.D.
Assistant Adjunct Professor of Psychiatry
University of California, San Diego
Office: 858-552-8585 x6109
Cell: 858-354-3756
> From: Antao Du
antao@itsa.ucsf.edu
> Date: Fri, 7 Oct 2005 17:27:41 -0700
> To: Nick Schmansky
nicks@nmr.mgh.harvard.edu
> Cc: Freesurfer Mailing List
freesurfer@nmr.mgh.harvard.edu
> Subject: RE: [Freesurfer] RE: make_average_surface
>
> There is no any output when I add --echo.
>
> Antao
>
>> -----Original Message-----
>> From: freesurfer-bounces@nmr.mgh.harvard.edu
>> [mailto:freesurfer-bounces@nmr.mgh.harvard.edu]On Behalf Of Nick
>> Schmansky
>> Sent: Friday, October 07, 2005 3:04 PM
>> To: Antao Du
>> Cc: Freesurfer Mailing List
>> Subject: Re: [Freesurfer] RE: make_average_surface
>>
>>
>> Add --echo to the command to print its activity, and then send me the
>> output.
>>
>> On Fri, 2005-10-07 at 15:00 -0700, Antao Du wrote:
>>> Hi, When I run make_average_surface --subjects AD1293 AD1297
>> AD1299 --out
>>> average_cn, it finished within 1 second without any output and any error
>>> message. I don't know what is wrong. Any helps there?
>>>
>>> I have not updated my freesurface so I downloaded
>> make_average_surface from
>>> a post by Nick in July, 2005.
>>>
>>> Thanks,
>>>
>>> Antao
>>>
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>>>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>>
>>
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>
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