Hi Seán
I'm not sure. I think Satra posted the original issue, so maybe he knows. Satra?
cheers Bruce On Thu, 19 Oct 2017, Seán Froudist Walsh wrote:
Hi, Was the following issue ever solved? (sorry hit send too early!) https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50297.html I tried and, like the previous two people it fails on mri_watershed. https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50297.html Best wishes, Sean
Hi Mike
it's hard to say without looking at the data. if you upload the subject dir we will take a look
Bruce On Thu, 24 Nov 2016, Michael Craig wrote:
Hi All, I am trying to run recon-all on the Allen Brain Institute T1 images. It works without any issue on all but one subject (H0351.1009).
I saw this post from a few years ago describing the exact problem I’m having, but don’t see a solution. Has anyone figured out how to get this subject to run in recon-all? Or is it simply a matter of there not being enough contrast between grey and white matter? Thanks for the help!
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-July/031482.html
Best wishes, Mike
On 19 October 2017 at 15:05, Seán Froudist Walsh froudiss@tcd.ie wrote: Hi, Was the following issue ever solved?