Hi Michael
I believe it is telling you that once the file expert.opts exists in the scripts dir of a subject it will be used by default, and you don't need to specify it on the command line.
cheers Bruce On Thu, 20 Mar 2014, Michael Green wrote:
I've been calling up an expert options file which contains the text "mri_normalize -gentle" but I'm having trouble executing it with this command:
"recon-all -s 002 -expert 002/scripts/expert.opts"
It results in the following error:
ERROR: there is a pre-existing expert options file and you have specified an expert options file on the command-line. If you want to use the file specified on the command-line, you must run with -xopts-overwrite, or you may edit the existing file /mridata/workingdata/INS/subjects/002/scripts/expert.opts (and not use the -expert option).
The help message is a little confusing (and not use the -expert option) but executing
"recon-all -s 002 -xopts-overwrite 002/scripts/expert.opts"
gives me the following error:
ERROR: Flag 002/scripts/expert.opts unrecognized.
Any ideas or help on this one?
--
Michael Green Senior Research Officer Lecturer, UNSW
Neuroscience Research Australia
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia T +61 2 9399 1086
neura.edu.au