I have a subject that has gotten stuck on the CA Normalize step. I have tried running it several times and it always gets stuck in the same place, running away for days if I let it, using 99.9% of the CPU. We are running RH4-x86_64-R302.
Is this something that has been observed / dealt with before?
This is the screen output for the CA Normalize step up to the point of getting stuck: #-------------------------------------- #@# CA Normalize Fri Jan 5 11:02:19 PST 2007 /space/emc1/4/data/MMILDB/ADNI/Containers/FREESURFERRECON_005_S_0448_20060504.085355_1/mri
mri_ca_normalize -mask brainmask.mgz nu.mgz /space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R302/average/RB_all_2006-02-15.gca transforms/talairach.lta norm.mgz
using MR volume brainmask.mgz to mask input volume... reading 1 input volumes reading atlas from '/space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R302/average/RB_all_2006-02-15.gca'... setting gca type = Normal gca type reading transform from 'transforms/talairach.lta'... INFO: compute sample coordinates transform 1.405 -0.358 0.038 35.157; 0.193 0.687 -0.595 80.138; 0.176 0.895 1.062 -269.933; 0.000 0.000 0.000 1.000; INFO: transform used
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