HI Stephen,
not quite raw image space, but mostly. Definitely not tal coords. We resample into a 256^3 volume aligned with the native scanner coords.
cheers, Bruce On Wed, 30 Jul 2008, Stephen Rose wrote:
Hi
I am a new freesurfer user so I apologize in advance for the basic questions.
If I already have my MPRAGE images in mgz format (i.e I don't need to convert the raw dicom data with mri_convert), what changes to the command line (below) do I need so that the all the correct data directories are initially set up (and not call mri_convert)?
recon-all -i <path-to-structural> -s <subjid>
When viewing the results of autorecon1 and 2 are all the surfaces and segmentation results shown in raw image space and not Talairach space?
Thanks for your help Stephen
A/Prof. Stephen Rose Principal Research Fellow Centre for Magnetic Resonance Centre for Clinical Research University of Queensland Brisbane, QLD, 4072 Australia Telephone: +61 7 33466101 Mobile: 0412023958 Fax: +61 7 33653833