What exact website page are you using for help on launchpad? launchpad has no opteron nodes so you should not be specifying that resource. Its queue names are also different than seychelles. There is no sergeant queue.
Read:
https://www.nmr.mgh.harvard.edu/martinos/itgroup/launchpad.html
On Tue, 21 Jun 2011, Chindhuri Selvadurai wrote:
Hello,
I am trying to do recon-all using launchpad, and I am not sure how to fix the error I am getting. I checked IT's launchpad help website, but can't seem to figure it out.
Using fs v4 subjects_dir: /space/ventzl/36/users/RespMon12C/subjects
command: pbsubmit -q sergeant -l nodes=1:opteron -m chinsel -c 'recon-all -s RMAUT021 -all -i /cluster/archive/292/siemens/TrioTim-35006-20110508-105030-353000/353000-000004-000001.dcm -mail chinsel@nmr.mgh.harvard.edu -force'
This is the output I'm getting:
Opening pbsjob_3 qsub -V -S /bin/sh -m abe -M chinsel -q sergeant -l nodes=1:opteron -r n /pbs/chinsel/pbsjob_3 qsub: Unknown queue MSG=cannot locate queue FATAL: qsub call failed. Check above for error messages.
I'm also not getting any e-mails. Is there a way to check an error log like on seychelles?
Best,
Chindhuri Selvadurai
Psychiatric Neuroimaging, Manoach Lab Martinos Center for Biomedical Imaging, MGH Phone: (617)726-0307 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--------------------------------------------------------------- Paul Raines email: raines at nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street Charlestown, MA 02129 USA