Hi FreeSurfer Developers,
I'm having trouble using bbregister with the `--init-best` flag, a minimal example and error message is like this: $> bbregister --s ag00 --mov data/ag00/align/raiders/run00_ref.nii.gz --init-best --bold --lta data/ag00/align/raiders/run00_ref_to_anat.lta ERROR: cannot spec an init method with --init-best
It seems `InitCoreg` is set to 1 by default in the code of bbregister. Therefore, when `--init-best` is also set, it would always trigger the conflict detection and exit with the error message.
Here are some related version information: - FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c - bbregister version: $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ - OS: CentOS Linux release 7.3.1611 (Core)
Best, Feilong