Re: [Freesurfer] aparc.annot question from August

Run recon-all only with "-s subject -parcstats". This will regenerate the ?h.aparc.stats file doug

Keefe, Helen L wrote:

Hi Everyone,

I have not received a response on this question from August -= cold we revisit it please?

thanks, Helen

[Freesurfer] Saving annotation and stats after expand boundary of region

*Keefe, Helen L* helen-keefe at uiowa.edu mailto:freesurfer%40nmr.mgh.harvard.edu?Subject=Re:%20%5BFreesurfer%5D%20Saving%20annotation%20and%20stats%20after%20expand%20boundary%20of%0A%09region&In-Reply-To=%3C353409BC97D32F48B41827FF380DD9A105F2DC%40hc-mailboxc1-n4.healthcare.uiowa.edu%3E /Tue Aug 16 12:10:25 EDT 2011/

* Previous message: [Freesurfer] update v5.1 and trac-all command
  <https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/019884.html>
* Next message: [Freesurfer] Abnormal segmentation of hippocampal
  subfields
  <https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/019832.html>
* *Messages sorted by:* [ date ]
  <https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/date.html#19828>
  [ thread ]
  <https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/thread.html#19828>
  [ subject ]
  <https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/subject.html#19828>
  [ author ]
  <https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/author.html#19828>

Hi Bruce, Doug, and All,

I have corrected a boundary between lh corpuscallosum and caudalanteriorcingulate.

I have overwritten the label/lh.aparc.annot as per Bruce's email below.

However, doesn't this leave a number of files with incorrect information now in the stats directory?

Do I need to rerun something to bring these up to date?

Thanks, Helen

Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential and may be legally privileged. If you are not the intended recipient, you are hereby notified that any retention, dissemination, distribution, or copying of this communication is strictly prohibited. Please reply to the sender that you have received the message in error, then delete it. Thank you.

---

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer