Hi Akila, Have you run recon_all on your structural data? Lilla ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of A.R. Sekar ars66@cam.ac.uk Sent: Friday, May 14, 2021 10:35 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Cerebellum Segementation
External Email - Use Caution
External Email - Use Caution
Hello Experts!
This is the first time I am doing tractography and my aim is to do it specifically for the cerebellum. I saw online that FreeSurfurer can segment the cerebellum, to create the ROI but I’m not entirely sure how to go about this. So far I have done the pre-processing, co-registration onto diffusion space and created FOD. It would be great if you could give me advice and any feedback about the pipeline.
Thanks for your help!
Regards,
Akila