External Email - Use Caution
That sounds good to me! The file is about 100MB so I got a sharing link here. https://drive.google.com/file/d/15IfN6EzZj_wAW1y0v8USIs2tthfpdH95/view?usp=s...
On Tue, Dec 10, 2019 at 12:46 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
the topology fixing output should let you find the defect that is so big and figure out how to fix it. If you want to tar/gzip the entire subject dir and send it to us we will be happy to help
cheers Bruce On Tue, 10 Dec 2019, Kong Chuizheng wrote:
External Email - Use CautionHello Bruce, We are trying to get the pial surface file for both hemisphere. However,
freesurfer would freeze after a
while at a XL defect. Since the hemisphere without tumor also has little
holes, I thought this might
have other reasons.
Best, Chuizheng Kong
On Tue, Dec 10, 2019 at 8:58 AM Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
Does your 3D model need to be topologically correct? What are youtrying
to achieve? And are the holes/handles due to the tumor? Can yousend us
some images? cheers Bruce On Tue, 10 Dec 2019, Kong Chuizheng wrote: > > External Email - Use Caution > > Hello Freesurfer Developers, > > > > We are trying to construct a 3D cortex model of a tumoursubject. The recon-all.log showed
that the > program froze at Correction of the Topology with "XL defectdetected." I followed the
procedure of the > online tutorial page (https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freev... )
> and found that there's lots of "holes" and sharp abnormal shapesin the
lh/rh.smoothwm.nofix file. It > will be very hard to fix this by hand, and we wonder if you cangive us some advice.
> > > > Sincerely, > > Chuizheng Kong > > > > Chuizheng Kong > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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