Hi Robert
disk space and permissions are really the only two things I can think of. Can you try writing it somewhere else? Or using .mgz as output (or .nii without the .gz)?
cheers Bruce
On Wed, 4 Jan 2017, Wujek, Robert wrote:
I'm trying to convert a group of .dcm files to .nii.gz, but I've been getting the following output with an error at the end...
mri_convert IM-0020-0001.dcm example.nii.gz
$Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
reading from IM-0020-0001.dcm...
Starting DICOMRead2()
dcmfile = /Users/Desktop/example/IM-0020-0001.dcm
dcmdir = /Users/Desktop/example
Ref Series No = 23
Found 482 files, checking for dicoms
Found 480 dicom files in series.
First Sorting
Computing Slice Direction
Vs: 0 0 3
Vs: 0 0 1
Second Sorting
Counting frames
nframes = 6
nslices = 80
ndcmfiles = 480
PE Dir = ROW (dicom read)
TransferSyntaxUID: --1.2.840.10008.1.2.1--
jpegUID: --1.2.840.10008.1.2.4--
Loading pixel data
TR=7584.00, TE=11.10, TI=1500.00, flip angle=111.00
i_ras = (-1, 0, 0)
j_ras = (0, -1, 0)
k_ras = (-0, -0, 1)
writing to example.nii.gz...
niiWrite(): error opening file example.nii.gz
ERROR: failure writing example.nii.gz?
I'm wondering how I should interpret this error. I have disk space, and proper permissions. I also have experience using mri_convert with other projects, so generally speaking, I am capable with this script. I would appreciate any suggestions. Thank you.
-Robert Wujek?
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