Hi,
I am wondering the errors I got from recon-all is from my FreeSurfer installation, please comments.
Here is my error: //////////////////////// Reporting on 70 segmentations /home/pom/Software/freesurfer/subjects/S009002A/label #-------------------------------------------- #@# BA Labels lh Mon Jul 29 07:24:35 PDT 2013 INFO: fsaverage subject does not exist in SUBJECTS_DIR INFO: Creating symlink to fsaverage subject...
cd /home/pom/Software/freesurfer/subjects; ln -s /home/pom/Software/freesurfer/subjects/fsaverage; cd -
mri_label2label --srcsubject fsaverage --srclabel /home/pom/Software/freesurfer/subjects/fsaverage/label/lh.BA1.label --trgsubject S009002A --trglabel ./lh.BA1.label --hemi lh --regmethod surface
Too many levels of symbolic links mri_label2label: could not open label file /home/pom/Software/freesurfer/subjects/fsaverage/label/lh.BA1.label
srclabel = /home/pom/Software/freesurfer/subjects/fsaverage/label/lh.BA1.label srcsubject = fsaverage trgsubject = S009002A trglabel = ./lh.BA1.label regmethod = surface
srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0
SUBJECTS_DIR /home/pom/Software/freesurfer/subjects FREESURFER_HOME /home/pom/Software/freesurfer Loading source label. Invalid argument ERROR reading /home/pom/Software/freesurfer/subjects/fsaverage/label/lh.BA1.label Linux PomLinux 2.6.32-45-generic-pae #104-Ubuntu SMP Tue Feb 19 21:36:53 UTC 2013 i686 GNU/Linux
recon-all -s S009002A exited with ERRORS at Mon Jul 29 07:24:35 PDT 2013
For more details, see the log file /home/pom/Software/freesurfer/subjects/S009002A/scripts/recon-all.log To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting //////////////////////////////
thanks
Pom