Hello Bruce,
Let me rephrase my question. When I pass a brain MRI to freesurfer, it transforms the image spatially before it does the segmentation. Now the segmented objects have different orientation from the original MRI. My question is how can I transform the segmentation back to original MRI?
Thanks Shahab
__________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com