Hi,
Please ignore the previous question. I seem to have figured it out... for now.
Thanks, Allie
On Wed, Mar 9, 2011 at 2:29 PM, Allie Rosen rosen.allie@gmail.com wrote:
Hi Again,
I made a label on my own instead of using annotation2label. First, is this even allowed?
Now I am trying to use label2annot. I'm not sure how to specify the colour table. I typed in: "--ctab FreeSurferColourLUT.txt but it can't find the file. I found it in the freesurfer home file, and copied it into my subject directory, and into the individual subject's file. Should I put it somewhere else? Is that even the correct file?
Thanks! Allie
On Wed, Mar 9, 2011 at 2:12 PM, Allie Rosen rosen.allie@gmail.com wrote:
My lab doesn't have matlab... I'll work on the label2annot and annotation2label programs.
Thanks, Allie
On Wed, Mar 9, 2011 at 2:02 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
we don't have any tools for doing so, but you could do it in matlab On Wed, 9 Mar 2011, Allie Rosen wrote:
Hi,
Can I modify the colour table of an annotation file? Apparently there
is an
embedded colour table in annotation files.
Allie
On Wed, Mar 9, 2011 at 1:07 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
It will eliminate them from the annotation which should mean that
those
areas should be transparent. doug
Allie Rosen wrote:
Hi Doug,
Thanks for the response. Do those commands make the
annotations/labels
transparent?
Allie
On Tue, Mar 8, 2011 at 10:58 PM, Douglas Greve <
greve@nmr.mgh.harvard.edu<mailto:
greve@nmr.mgh.harvard.edu>> wrote:
I've never used that, but you can use mris_annotation2label to break the annotation in to individual labels,then use mris_label2annot to put the ones you want back together.
doug
On 3/8/11 10:13 PM, Allie Rosen wrote:
> Hi Everyone, > > I'm wondering if it is possible to use the "cut" function in > TkSurfer to delete specific atlas annotations. For example, can I > create a label of my specific area of interest, inverse the label > to highlight the rest of the brain, and then either cut out these > regions or make them transparent? > > Can anyone help me out? > > Thank you, > > Allie Rosen, MSc > Graduate Student, Department of Neurosurgery > Toronto Western Hospital 14-327 399 Bathurst St. > University of Toronto > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:
Freesurfer@nmr.mgh.harvard.edu
>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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