Dear all,
just having started using Freesurfer, I have the following question which has also been touched by other people but I couldn't find a solution for my problem.
I have about 100 subjects from which I want to create my own template to be used by Freesurfer. These have been my steps:
1. recon-all (on all my subjects)
2. make_average_subject --subjects (list of all subjects)
3. I wanted to use the code provided on the Wiki: for subject in 'subjectList.txt'; do cd $SUBJECTS_DIR/subject mris_register -curv surf/lh.sphere $SUBJECTS_DIR/newtemplate/lh. reg.template.tif surf/lh.sphere.reg.newtemplate end
The first two steps went fine. But I do not know how to handle that template.tif-File, because that hasn't been created as a result during my second step. Have I missed something ? Furthermore there is this other command
mris_make_template
but I do not know whether (and where in my processing) I should use that (perhaps instead of make_average_subject) ? Thanks for any help, Bernd