Hi, Bruce,
I'm wondering where I can get this system-wide FreeSurfer 5.1 download? Also, is there any manual or instruction for installation on multi-user clusters?
Thank you very much!
Zheng Wang
-----邮件原件----- 发件人: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] 代表 freesurfer-request@nmr. mgh.harvard.edu 发送时间: 2012年8月22日 0:00 收件人: freesurfer@nmr.mgh.harvard.edu 主题: Freesurfer Digest, Vol 102, Issue 23
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Today's Topics:
1. mri_convert introduces flip (Janosch Linkersd?rfer) 2. freesurfer license on multi-user cluster (John Donners) 3. QDEC's clusters and connectivity maps (Antonella Kis) 4. Re: freesurfer license on multi-user cluster (Bruce Fischl) 5. Re: Edits to aparc+aseg.mgz (Sarosh, Cyrus) 6. Convert QDEC clusters on the MNI_152_T1 space (Antonella Kis)
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Message: 1 Date: Tue, 21 Aug 2012 13:42:43 +0200 From: Janosch Linkersd?rfer notes4januz@googlemail.com Subject: [Freesurfer] mri_convert introduces flip To: freesurfer freesurfer@nmr.mgh.harvard.edu Message-ID: BC636725-64B9-4919-B13D-A270261A174F@googlemail.com Content-Type: text/plain; charset="iso-8859-1"
Hi experts,
I?m trying to convert original images in native space from the LPBA40-Atlas (http://www.loni.ucla.edu/Atlases/LPBA40/) from img/hdr to nii/nii.gz.
Conversion always results in a left/right flip. Also, mri_convert complains that no .mat file is available but there are no mat files provided...
Here my command and output:
mri_convert S01.native.mri.img S01.native.mri.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from S01.native.mri.img... ----------------------------------------------------------------- INFO: could not find /Users/Januz/Downloads/__Tests/__test/S01.native.mri.mat file for direction cosine info. INFO: use Analyze 7.5 hdr->hist.orient value: 0, transverse unflipped (default). INFO: if not valid, please provide the information in /Users/Januz/Downloads/__Tests/__test/S01.native.mri.mat file ----------------------------------------------------------------- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to S01.native.mri.nii.gz...
Thanks for your help,
Janosch