Dear freesurfer exports,
I still have the problem to recon the surface with more than 10 inputs from one person with following command:
��recon-all -s ${subjec} -autorecon1 �Cnotal-check -clean-bm -gcut -no-isrunning -noappend��,
Is there a limit on the number of the inputs?
What is the algorithm applied by ��recon-all�� to average these images? Is it viable to average input images with other methods, then apply ��recon-all�� to the averaged result?
Thanks very much for your help!
Dong Haoming
������: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] ���� ����� ����ʱ��: 2015��11��26�� 13:11 �ռ���: freesurfer@nmr.mgh.harvard.edu ����: [Freesurfer] recon-all with more than 10 inputs
Dear freesurfer exports,
I am trying to recon more than 10 T1 scans from a single subject, but something went wrong.
I have converted all T1 nifti files into mgz format into mri/orig directory with following names: 001.mgz 002.mgz ��. 010.mgz 011.mgz�� But when I run the command:
��recon-all �Cs ${subjec} �Cautorecon1 �Cnotal�Ccheck �Cclean-bm �Cgcut �C no-isrunning -noappend��,
it seems that recon-all only recognizes the files with names 01*.mgz(i.e. 0013.mgz), the 00*.mgz(i.e. 001.mgz) files failed to be processed. Once I change the files name to ��001.mgz 002.mgz ��. 0010.mgz 0011.mgz��, the 00*. mgz(i.e. 001.mgz) are able to be recognized, but the 001*.mgz(i.e. 0013.mgz) files failed.
How should I deal with this to make all files recognized?
Sincerely,
Dong Haoming