Run preproc-sess with -no-subcort-mask You may need to delete the mni305 files that are there so that it regenerates them. doug
On 8/13/13 3:49 PM, Cesar Echavarria wrote:
Hi Freesurfers,
I want to look at activity in my subjects' retina for one of my experiments. I did volume-based analysis in freesurfer version 5.3 but I noticed that activity outside of the brain has been masked. Is there an option somewhere along the processing pipeline to prevent masking of activity outside the brain? I know that freesurfer version 4.5 does not do this masking, but was wondering if there was a way to stick to the current freesurfer version.
Thanks you in advance for your help.
Cesar
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