Re: [Freesurfer] [Request of response] Fwd: Error during QDEC

Those are the qdec tables, not the fsgd file. Look in the qdec output folder for a file called y.fsgd. Also please remember to post to the list and not to us personally

On 6/15/18 12:40 AM, Seung-Gul Kang (강승걸) wrote:

External Email - Use Caution

Hi Doug,

Thank you for your reply.

I send my FSGD files. sui3_qdec.table sui5_qdec.table - This file contains the normalization of SSI score (nrSSI).

I want to see the correlation (or regression) between the brain surface areas with significant difference between two groups and SSI score. When I enter 'SSI' or 'nrSSI' into covariate in QDEC, then error occurs.

Best regards, Seung-Gul

*S**eung-Gul Kang, M.D., Ph.D. * Psychiatrist, Professor; Department of Psychiatry, Gil Medical Center 연구부학장. Dean, Department of Research Affairs; Gachon University College of Medicine 인천광역시자살예방센터장. Director, Incheon Suicide Prevention Center 21, Namdong-daero 774 beon-gil, Namdong-gu, Incheon, 21565, South Korea

ᐧ

2018년 6월 15일 (금) 오전 12:26, Douglas N. Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu>님이 작성:

Please send the y.fsgd file


On 06/13/2018 09:30 PM, Seung-Gul Kang (강승걸) wrote:
>
>         External Email - Use Caution
>
> Dear Freesurfer experts,
>
> I send you this e-mail again in anticipation of your help.
>
> I see the error message when I perform QDEC.
> The error message is as below.
>
> Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $
>
> cwd /home/sgk
>
> cmdline mri_glmfit --y
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
> --fsgd /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods
> --glmdir /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf
fsaverage lh
> --label /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat
>
> sysnameLinux
>
> hostname localhost.localdomain
>
> machinex86_64
>
> usersgk
>
> FixVertexAreaFlag = 1
>
> UseMaskWithSmoothing1
>
> OneSampleGroupMean 0
>
> y/mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
>
> logyflag 0
>
> usedti0
>
> FSGD /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd
>
> labelmask/mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label
>
> maskinv 0
>
> glmdir /mnt/hgfs/share/suicide/qdec/LH_area_SSI
>
> IllCondOK 0
>
> ReScaleX 1
>
> DoFFx 0
>
> Creating output directory /mnt/hgfs/share/suicide/qdec/LH_area_SSI
>
> Loading y from /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
>
> INFO: gd2mtx_method is dods
>
> Saving design matrix to
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/Xg.dat
>
> Normalized matrix condition is 24522.5
>
> Design matrix ------------------
>
>
1.0000.0000.0000.00015.0000.0000.0000.00024.0000.0000.0000.00021.0000.0000.0000.000149457.5940.0000.0000.000;
>
>
1.0000.0000.0000.00019.0000.0000.0000.00050.0000.0000.0000.00020.0000.0000.0000.000161540.2030.0000.0000.000;
>
>
1.0000.0000.0000.0007.0000.0000.0000.00055.0000.0000.0000.00026.0000.0000.0000.000167295.9060.0000.0000.000;
>
>
0.0000.0001.0000.0000.0000.00010.0000.0000.0000.00031.0000.0000.0000.00027.0000.0000.0000.000175241.7030.000;
>
>
0.0000.0001.0000.0000.0000.00015.0000.0000.0000.00059.0000.0000.0000.00023.0000.0000.0000.000165616.7970.000;
>
>
0.0000.0001.0000.0000.0000.00011.0000.0000.0000.00057.0000.0000.0000.00022.0000.0000.0000.000183255.5940.000;
>
>
1.0000.0000.0000.00026.0000.0000.0000.00037.0000.0000.0000.00023.0000.0000.0000.000159212.2030.0000.0000.000;
>
>
0.0000.0001.0000.0000.0000.00014.0000.0000.0000.00050.0000.0000.0000.00022.0000.0000.0000.000170017.0940.000;
>
>
0.0000.0001.0000.0000.0000.00016.0000.0000.0000.00026.0000.0000.0000.00019.0000.0000.0000.000190217.9060.000;
>
>
0.0000.0001.0000.0000.0000.0001.0000.0000.0000.00039.0000.0000.0000.00019.0000.0000.0000.000156341.0000.000;
>
>
1.0000.0000.0000.00018.0000.0000.0000.00049.0000.0000.0000.00032.0000.0000.0000.000168844.2970.0000.0000.000;
>
>
1.0000.0000.0000.00021.0000.0000.0000.00039.0000.0000.0000.00026.0000.0000.0000.000149945.4060.0000.0000.000;
>
>
1.0000.0000.0000.00011.0000.0000.0000.00039.0000.0000.0000.00022.0000.0000.0000.000166132.9060.0000.0000.000;
>
>
1.0000.0000.0000.00017.0000.0000.0000.00041.0000.0000.0000.00025.0000.0000.0000.000139924.4060.0000.0000.000;
>
>
1.0000.0000.0000.00027.0000.0000.0000.00045.0000.0000.0000.00034.0000.0000.0000.000133331.7970.0000.0000.000;
>
>
1.0000.0000.0000.00011.0000.0000.0000.00047.0000.0000.0000.00024.0000.0000.0000.000164844.7030.0000.0000.000;
>
>
1.0000.0000.0000.00023.0000.0000.0000.00046.0000.0000.0000.00026.0000.0000.0000.000163024.2030.0000.0000.000;
>
>
0.0000.0001.0000.0000.0000.00031.0000.0000.0000.00042.0000.0000.0000.00033.0000.0000.0000.000140203.7970.000;
>
>
0.0000.0001.0000.0000.0000.00018.0000.0000.0000.00021.0000.0000.0000.00029.0000.0000.0000.000186282.2970.000;
>
>
0.0000.0000.0001.0000.0000.0000.00018.0000.0000.0000.00021.0000.0000.0000.00017.0000.0000.0000.000171746.094;
>
>
0.0001.0000.0000.0000.00017.0000.0000.0000.00034.0000.0000.0000.00015.0000.0000.0000.000145005.2030.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.00015.0000.0000.0000.00054.0000.0000.0000.00027.0000.0000.0000.000168633.203;
>
>
0.0000.0000.0001.0000.0000.0000.00017.0000.0000.0000.00027.0000.0000.0000.00020.0000.0000.0000.000186731.297;
>
>
0.0001.0000.0000.0000.0001.0000.0000.0000.00061.0000.0000.0000.00028.0000.0000.0000.000154627.5000.0000.000;
>
>
0.0001.0000.0000.0000.00010.0000.0000.0000.00044.0000.0000.0000.00022.0000.0000.0000.000154626.2970.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.0004.0000.0000.0000.00059.0000.0000.0000.00020.0000.0000.0000.000177918.500;
>
>
0.0001.0000.0000.0000.0004.0000.0000.0000.00056.0000.0000.0000.00027.0000.0000.0000.000157687.7970.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.0008.0000.0000.0000.00058.0000.0000.0000.00032.0000.0000.0000.000173899.094;
>
>
0.0000.0000.0001.0000.0000.0000.00021.0000.0000.0000.00020.0000.0000.0000.00018.0000.0000.0000.000175980.500;
>
>
0.0001.0000.0000.0000.0000.0000.0000.0000.00059.0000.0000.0000.00028.0000.0000.0000.000162526.7030.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.0002.0000.0000.0000.00037.0000.0000.0000.00020.0000.0000.0000.000198622.797;
>
>
0.0001.0000.0000.0000.0003.0000.0000.0000.00032.0000.0000.0000.00024.0000.0000.0000.000157633.9060.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.00017.0000.0000.0000.00021.0000.0000.0000.00021.0000.0000.0000.000164236.297;
>
>
0.0001.0000.0000.0000.00022.0000.0000.0000.00046.0000.0000.0000.00023.0000.0000.0000.000144559.7030.0000.000;
>
>
0.0001.0000.0000.0000.0007.0000.0000.0000.00032.0000.0000.0000.00024.0000.0000.0000.000156151.5000.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.00016.0000.0000.0000.00046.0000.0000.0000.00027.0000.0000.0000.000154306.406;
>
>
0.0000.0000.0001.0000.0000.0000.0000.0000.0000.0000.00019.0000.0000.0000.00020.0000.0000.0000.000188334.203;
>
>
0.0001.0000.0000.0000.00020.0000.0000.0000.00055.0000.0000.0000.00026.0000.0000.0000.000134977.4060.0000.000;
>
> --------------------------------
>
> ERROR: matrix is ill-conditioned or badly scaled, condno = 24522.5
>
> --------------------------------
>
> Possible problem with experimental design:
>
> Check for duplicate entries and/or lack of range of
>
> continuous variables within a class.
>
> If you seek help with this problem, make sure to send:
>
> 1. Your command line:
>
> mri_glmfit --y /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
--fsgd
> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods --glmdir
> /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf fsaverage lh
--label
> /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat
>
> 2. The FSGD file (if using one)
>
> 3. And the design matrix above
>
> Error in Analyze: command failed: mri_glmfit --y
> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh --fsgd
> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods --glmdir
> /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf fsaverage lh
--label
> /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat
>
> I also attach the error message.
>
> Could you tell me how I can fix this problem?
>
> I am sincerely looking forward to receiving your reply.
>
> Best regards,
> Seung-Gul
>
> *S**eung-Gul Kang, M.D., Ph.D. *
> Psychiatrist, Professor; Department of Psychiatry, Gil Medical
Center
> 연구부학장. Dean, Department of Research Affairs; Gachon University
> College of Medicine
> 인천광역시자살예방센터장. Director, Incheon Suicide Prevention
Center
> 21, Namdong-daero 774 beon-gil, Namdong-gu, Incheon, 21565,
South Korea
>
> ---------- Forwarded message ---------
> From: Seung-Gul Kang (강승걸) <sg.kang422@gmail.com
<mailto:sg.kang422@gmail.com>
> <mailto:sg.kang422@gmail.com <mailto:sg.kang422@gmail.com>>>
> Date: 2018년 6월 12일 (화) 오후 3:32
> Subject: Error during QDEC
> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
> <mailto:freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>>>
>
>
> Dear Freesurfer experts,
>
> I see the error message when I perform QDEC.
> The error message is as below.
>
> Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $
>
> cwd /home/sgk
>
> cmdline mri_glmfit --y
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
> --fsgd /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods
> --glmdir /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf
fsaverage lh
> --label /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat--C

>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat

>
>
> sysnameLinux
>
> hostname localhost.localdomain
>
> machinex86_64
>
> usersgk
>
> FixVertexAreaFlag = 1
>
> UseMaskWithSmoothing1
>
> OneSampleGroupMean 0
>
> y/mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
>
> logyflag 0
>
> usedti0
>
> FSGD /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd
>
> labelmask/mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label
>
> maskinv 0
>
> glmdir /mnt/hgfs/share/suicide/qdec/LH_area_SSI
>
> IllCondOK 0
>
> ReScaleX 1
>
> DoFFx 0
>
> Creating output directory /mnt/hgfs/share/suicide/qdec/LH_area_SSI
>
> Loading y from /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
>
> INFO: gd2mtx_method is dods
>
> Saving design matrix to
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/Xg.dat
>
> Normalized matrix condition is 24522.5
>
> Design matrix ------------------
>
>
1.0000.0000.0000.00015.0000.0000.0000.00024.0000.0000.0000.00021.0000.0000.0000.000149457.5940.0000.0000.000;
>
>
1.0000.0000.0000.00019.0000.0000.0000.00050.0000.0000.0000.00020.0000.0000.0000.000161540.2030.0000.0000.000;
>
>
1.0000.0000.0000.0007.0000.0000.0000.00055.0000.0000.0000.00026.0000.0000.0000.000167295.9060.0000.0000.000;
>
>
0.0000.0001.0000.0000.0000.00010.0000.0000.0000.00031.0000.0000.0000.00027.0000.0000.0000.000175241.7030.000;
>
>
0.0000.0001.0000.0000.0000.00015.0000.0000.0000.00059.0000.0000.0000.00023.0000.0000.0000.000165616.7970.000;
>
>
0.0000.0001.0000.0000.0000.00011.0000.0000.0000.00057.0000.0000.0000.00022.0000.0000.0000.000183255.5940.000;
>
>
1.0000.0000.0000.00026.0000.0000.0000.00037.0000.0000.0000.00023.0000.0000.0000.000159212.2030.0000.0000.000;
>
>
0.0000.0001.0000.0000.0000.00014.0000.0000.0000.00050.0000.0000.0000.00022.0000.0000.0000.000170017.0940.000;
>
>
0.0000.0001.0000.0000.0000.00016.0000.0000.0000.00026.0000.0000.0000.00019.0000.0000.0000.000190217.9060.000;
>
>
0.0000.0001.0000.0000.0000.0001.0000.0000.0000.00039.0000.0000.0000.00019.0000.0000.0000.000156341.0000.000;
>
>
1.0000.0000.0000.00018.0000.0000.0000.00049.0000.0000.0000.00032.0000.0000.0000.000168844.2970.0000.0000.000;
>
>
1.0000.0000.0000.00021.0000.0000.0000.00039.0000.0000.0000.00026.0000.0000.0000.000149945.4060.0000.0000.000;
>
>
1.0000.0000.0000.00011.0000.0000.0000.00039.0000.0000.0000.00022.0000.0000.0000.000166132.9060.0000.0000.000;
>
>
1.0000.0000.0000.00017.0000.0000.0000.00041.0000.0000.0000.00025.0000.0000.0000.000139924.4060.0000.0000.000;
>
>
1.0000.0000.0000.00027.0000.0000.0000.00045.0000.0000.0000.00034.0000.0000.0000.000133331.7970.0000.0000.000;
>
>
1.0000.0000.0000.00011.0000.0000.0000.00047.0000.0000.0000.00024.0000.0000.0000.000164844.7030.0000.0000.000;
>
>
1.0000.0000.0000.00023.0000.0000.0000.00046.0000.0000.0000.00026.0000.0000.0000.000163024.2030.0000.0000.000;
>
>
0.0000.0001.0000.0000.0000.00031.0000.0000.0000.00042.0000.0000.0000.00033.0000.0000.0000.000140203.7970.000;
>
>
0.0000.0001.0000.0000.0000.00018.0000.0000.0000.00021.0000.0000.0000.00029.0000.0000.0000.000186282.2970.000;
>
>
0.0000.0000.0001.0000.0000.0000.00018.0000.0000.0000.00021.0000.0000.0000.00017.0000.0000.0000.000171746.094;
>
>
0.0001.0000.0000.0000.00017.0000.0000.0000.00034.0000.0000.0000.00015.0000.0000.0000.000145005.2030.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.00015.0000.0000.0000.00054.0000.0000.0000.00027.0000.0000.0000.000168633.203;
>
>
0.0000.0000.0001.0000.0000.0000.00017.0000.0000.0000.00027.0000.0000.0000.00020.0000.0000.0000.000186731.297;
>
>
0.0001.0000.0000.0000.0001.0000.0000.0000.00061.0000.0000.0000.00028.0000.0000.0000.000154627.5000.0000.000;
>
>
0.0001.0000.0000.0000.00010.0000.0000.0000.00044.0000.0000.0000.00022.0000.0000.0000.000154626.2970.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.0004.0000.0000.0000.00059.0000.0000.0000.00020.0000.0000.0000.000177918.500;
>
>
0.0001.0000.0000.0000.0004.0000.0000.0000.00056.0000.0000.0000.00027.0000.0000.0000.000157687.7970.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.0008.0000.0000.0000.00058.0000.0000.0000.00032.0000.0000.0000.000173899.094;
>
>
0.0000.0000.0001.0000.0000.0000.00021.0000.0000.0000.00020.0000.0000.0000.00018.0000.0000.0000.000175980.500;
>
>
0.0001.0000.0000.0000.0000.0000.0000.0000.00059.0000.0000.0000.00028.0000.0000.0000.000162526.7030.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.0002.0000.0000.0000.00037.0000.0000.0000.00020.0000.0000.0000.000198622.797;
>
>
0.0001.0000.0000.0000.0003.0000.0000.0000.00032.0000.0000.0000.00024.0000.0000.0000.000157633.9060.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.00017.0000.0000.0000.00021.0000.0000.0000.00021.0000.0000.0000.000164236.297;
>
>
0.0001.0000.0000.0000.00022.0000.0000.0000.00046.0000.0000.0000.00023.0000.0000.0000.000144559.7030.0000.000;
>
>
0.0001.0000.0000.0000.0007.0000.0000.0000.00032.0000.0000.0000.00024.0000.0000.0000.000156151.5000.0000.000;
>
>
0.0000.0000.0001.0000.0000.0000.00016.0000.0000.0000.00046.0000.0000.0000.00027.0000.0000.0000.000154306.406;
>
>
0.0000.0000.0001.0000.0000.0000.0000.0000.0000.0000.00019.0000.0000.0000.00020.0000.0000.0000.000188334.203;
>
>
0.0001.0000.0000.0000.00020.0000.0000.0000.00055.0000.0000.0000.00026.0000.0000.0000.000134977.4060.0000.000;
>
> --------------------------------
>
> ERROR: matrix is ill-conditioned or badly scaled, condno = 24522.5
>
> --------------------------------
>
> Possible problem with experimental design:
>
> Check for duplicate entries and/or lack of range of
>
> continuous variables within a class.
>
> If you seek help with this problem, make sure to send:
>
> 1. Your command line:
>
> mri_glmfit --y /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh
--fsgd
> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods --glmdir
> /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf fsaverage lh
--label
> /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat--C

>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat--C

>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat

>
>
> 2. The FSGD file (if using one)
>
> 3. And the design matrix above
>
> Error in Analyze: command failed: mri_glmfit --y
> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/y.mgh --fsgd
> /mnt/hgfs/share/suicide/qdec/LH_area_SSI/qdec.fsgd dods --glmdir
> /mnt/hgfs/share/suicide/qdec/LH_area_SSI --surf fsaverage lh
--label
> /mnt/hgfs/share/suicide/fsaverage/label/lh.aparc.label --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Avg-area-SSI-Cor.mat--C

>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-S-NS-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-Diff-F-M-Cor-area-SSI.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Intercept-area.mat

> --C
>
/mnt/hgfs/share/suicide/qdec/LH_area_SSI/contrasts/lh-X-diagnosis-sex-Cor-area-SSI.mat
>
> I also attach the error message.
>
> Could you tell me how I can fix this problem?
>
> I am looking forward to receiving your reply.
>
> Best regards,
> Seung-Gul
>
> *S**eung-Gul Kang, M.D., Ph.D. *
> Psychiatrist, Professor; Department of Psychiatry, Gil Medical
Center
> 연구부학장. Dean, Department of Research Affairs; Gachon University
> College of Medicine
> 인천광역시자살예방센터장. Director, Incheon Suicide Prevention
Center
> 21, Namdong-daero 774 beon-gil, Namdong-gu, Incheon, 21565,
South Korea
>
> ᐧ
> ᐧ



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