External Email - Use Caution
Dear Yujing,
I hope this email finds you well.
I've checked the directory. /average/colortable_vpnl.txt and ./average/colortable_BA_thresh.txt are both as the same as the ones in the git repo. Also, the label files have been successfully generated in the subject’s label directory. I build this freesurfer on our own aarch64 cpu, with the current source code of git repo. Should I try the source code of 7.4.1? which works well with its x64 binaries on my intel-based cluster, but I'm not sure whether the problem can be solved on this aarch64 cpu.
Sincerely,
Tianxiang Lyu Graduate School of Medicine, Juntendo University
Huang, Yujing YHUANG43@mgh.harvard.edu 于2024年5月7日周二 21:23写道：
Your recon-all should have generated the following label files in your subject’s label directory:
label/?h.FG1.mpm.vpnl.label
label/?h.FG2.mpm.vpnl.label
label/?h.FG3.mpm.vpnl.label
label/?h.FG4.mpm.vpnl.label
label/?h.hOc1.mpm.vpnl.label
label/?h.hOc2.mpm.vpnl.label
label/?h.hOc3v.mpm.vpnl.label
label/?h.hOc4v.mpm.vpnl.label
I don’t know how you got your Freesurfer distributions. But it looks like your average/colortable_vpnl.txt is out of sync with mris_label2annot.
- download these two colortables from Freesurfer repo -
https://secure-web.cisco.com/1yaJ9rtkF1pEnV3tBbwmzU19ZQQLWvibkvCE5WtM29vK2Qh...
distribution/average/colortable_BA_thresh.txt
distribution/average/colortable_vpnl.txt
- copy them to your average/ directory
Best,
Yujing
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *LYU, TIANXIANG *Sent:* Tuesday, May 7, 2024 12:30 AM *To:* freesurfer@nmr.mgh.harvard.edu *Cc:* 内田航 w-uchida@juntendo.ac.jp *Subject:* [Freesurfer] mris_label2annot Error: FG1.mpm.vpnl not found in CTAB colortable_vpnl.txt
External Email - Use Caution *Hello FreeSurfer Developers,
I'm attempting to process recon-all commands, but in mris_label2annot command:
ERROR: FG1.mpm.vpnl not found in CTAB /vol0004/hp200139/data/u12257/freesurfer/average/colortable_vpnl.txt Command exited with non-zero status 1 @#@FSTIME 2024:05:07:07:05:22 mris_label2annot N 26 e 4.35 S 0.34 U 2.65 P 68% M 203264 F 4 R 3608 W 0 c 0 w 1728 I 18304 O 0 L 0.92 0.91 0.96
I've checked the directory, but find nothing strange. (file colortable_vpnl.txt exists)
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.
Sincerely,
Tianxiang Lyu
Graduate School of Medicine,
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