Hi Matt,
you can give a -rl <volume name> switch to "reslice like" a template volume. For a parcellation you'll want -interp nearest (or something like that) also.
cheers, Bruce On Sun, 23 Aug 2009, Matt Glasser wrote:
I am curious about how to use mri_convert to convert wmparc.mgz back to the space that the original nii.gz volume that I gave FreeSurfer was in without resampling for further analysis with FSL. The volume I imported was 176x208x176, and oriented xorient: Left to Right, yorient: Posterior to Anterior, and zorient: Inferior to Superior. When I run mri_convert wmparc.mgz wmparc.nii.gz I get a file that is 256x256x256, and oriented xorient: Right to Left, yorient: Superior to Inverior, and zorient: Posterior to Anterior. How do I use mri_convert to convert wmparc to the original space without resampling?
Thanks,
Matt.