20 Jan
2014
20 Jan
'14
8:47 p.m.
Hi Freesurfer Community,
I am using matlab to do a histogram segmentation on a FLAIR volume. The algorithm I am using best works with axial direction.
Is there any way to change the primary slice direction from sagittal to axial? I have tried mri_convert with --out_orientation set to LIA but that produces coronal.
Regards, Arash