[Freesurfer] Re: autorecon1

Hi Valentina,

did you actually put "<subject name>" on your command-line? <subject name> is supposed to be the name of your subject, eg, "bert" (but without the quotes). What's a "Flug"?

For your second question, there will not be a brain.mgz after the first step, but there will be a brainmask.mgz. Also, please see surfer.nmr.mgh.harvard.edu/fswiki/BugReporting for how to pose questions so that we can answer them better.

thanks

doug

Durastanti, Valentina (NIH/NINDS) [F] wrote:

Hi, I have 2 questions:

Number 1 when I try to run the first step: recon-all -subjid <su -autorecon1 He said: ERROR Flug <subject name> unrecognized

Number 2 After the first step of a subject I can't find the brain.mgz

Thanks Valentina