Hi everyone,
but then, when I do mri_convert -it analyze -i subject -o subject.mgz, the volume is shifted to one side (in addition to left/right swapped). If you look at the coronal sections I'm attaching, you see that a piece of ear the right ear is appearing at the left.
I also have this problem of left/right inversion and I cannot figure out why this happens. Do we have to specify a --out_orientation string ?
Thanks,
Olivier