Hi Navid, what do you mean by "the original image space"? Ie, what coordinates do you specifically want? Voxel? Scanner? doug
Navid Shiee wrote:
Dear Freesurfer team,
I have a question regarding Freesurfer surfaces. I submitted this questions to the wiki but did not get any response and I was wondering if you can help me on this issue. I am doing some experiments with Freesurfer and would like to have surfaces in the original image space. FS converts everything to 1mm^3 256x256x256 grid in the coronal space. I have axial images which does not have homogenous grid (although it has isotropic resolution). I know there is a command to convert the volumetric structural segmentation into the original space but could not find the command for surfaces. I would be very grateful if you can provide me with some information for doing this.
I appreciate your kind help in advance.
Regards,
-- Navid Shiee Ph.D. Candidate Laboratory of MEDical Image Computing (MEDIC) Image Analysis and Communication Laboratory (IACL) Johns Hopkins University
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