Dear Keith, Off the top of my head: nu.mgz, norm.mgz, aseg.mgz, and wmparc.mgz, all under ‘mri’. You will also need the other directories (‘tmp’, ‘stats’…) to exist, but they can be empty. In any case, I would try with one subject first 😉 Cheers, /E
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Keith Harenski kharenski@mrn.org Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Tuesday, November 24, 2020 at 11:25 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Files or directories required for subField calculation {Disarmed}
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We have 3369 freesurfer 5.3 extractions stored on backup. It amounts to about 1.5TB of data. We would like to run the amygdala / hippocampal subField extraction on that data. I am hesitant to run the extraction on our backup copy so I was going to restore the data onto our servers and run from there. However 1.5TB is a lot to restore. Is there a file or directory list from the initial freesurfer extraction the subField calculation requires that could be restored in lieu of each subject's entire directory?
Thank you, Keith
-- Keith Harenski Mobile MRI Manager Mobile MRI Core and Clinical Cognitive Neuroscience Laboratory
The Mind Research Network 1101 Yale Blvd NE Albuquerque, NM 87106-4188 Office (Cell): 505.504.1338 | Fax: 505.272.8002 kharenski@mrn.orgmailto:kharenski@mrn.org | MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be www.mrn.orghttp://secure-web.cisco.com/1gWpd7SLX7SCx_SqHWpaZjPyzfQUb2S7o0MHqR3XnN7i4gGARMrNCK3MqJQBYfeDoU2Ag8v_HJeStu3d71yUvVFPSMaBffCTQBh17HmFhTFtgm1vKDejQLqEaKNdDAlc9A0KUVklsZMz6Nt_6wU4xJLVqYNsGr0z6JrspyDedMpV1osF-vrT7raTxwPjpUFsA4iYr3-skazz25RQ-W9Gf6wJfE8MnvtPrvdf27dlcY_-3FP7i6U47RiZRs4z5MI25MucwQvHNkNf4-8dNiL-I-Q/http%3A%2F%2Fwww.mrn.org | MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be www.lrri.orghttp://secure-web.cisco.com/1iYBgiu2d5mXVxDO2FVhHcsbuSoThRu0-wDpbW4j4Ai7dTgGUCK0-k-1tvvqVwNdNiMMo8cEePJ7iFmsW-5LNCruuVDDNiX1vYHbtc7TTctwWQsqATBX1XjdW5vGHZfCQ_JVa3yy5RmgrvYdIK6sNKnXToBlt1Sj0CW5ELzJHp78Ql8MxmBh8zYDGw36enZoecAE_2qDgJyqAugFpEecq4luX_E2K_7JSECXx6-W-6zGeuBMiDkpZX4uDxgKVIvEJZXFbU58uy_e3XMVycrUVvw/http%3A%2F%2Fwww.lrri.org