mri_convert -at <tal.xfm> <in volume> <out volume>
make sure you use -rt nearest for the sagmentation volume to avoid trilinear interpolation. <tal.xfm> should be the talairach.xfm in the subject's transforms dir.
cheers Bruce
On Wed, 21 Oct 2009, Gabriel Go.Es. wrote:
Hello
i have a question i want to convert an MRI subject (brainmask.mgz in talairach apace) and a mask of subcortical structure of the same subject, from freesurfer to MNI colins space to work with SPM5, how can i make it?
and in fact i need to make this transformation to a set of subjects.
any help will be so appreciated
Best Regards
Gabriel
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