Hi Eli, I would advise against trying to run MC inside of QDEC. Use mri_glmfit-sim instead
On 06/01/2017 04:33 PM, Rockers, Elijah D. wrote:
Hello FS,
I am attempting to run a monte carlo simulation on some cortical thickness data in Qdec 1.5, but I get the following error:
ERROR: CSDread(): could not open ....../freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm4/abs/th40/mc-z.csd
I thought it might be a permissions issue since the installation is on an NFS share, but in fact the ......./lh/cortex/fwhm4/.... directory does not exist. There is a fwhm04, but not fwhm4. I have two versions of FS installed (5.3 and 6) so I thought it might be referencing the wrong version, but in fact both versions have the same directory structure anyway... Any ideas what is going on?
Thanks,
- Eli
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