External Email - Use Caution
Hi, I'm hoping someone can help with this strange error. Have been using recon-all on this dataset forever, and now all of a sudden it is completely failing just a few minutes into the processing. Attaching the recon-all.log file (had run a bunch of times, so only saved the last invocation in the file). It seems to get up to an mris_calc command to multiply the image by a scaling factor, but the number is missing.
Here is the last bit of code where it fails:
7.2.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1410486/ones.mgz --i ./tmp.mri_nu_correct.mni.1410486/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1410486/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1410486/output.mean.dat sysname Linux hostname mwagshul machine x86_64 user mwagshul whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1410486/ones.mgz Loading ./tmp.mri_nu_correct.mni.1410486/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation
Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.1410486/output.mean.dat mri_segstats done Missing parameters. Usage: bc inputImageFile inputSegmentationFile side PathToTrainingFiles outputSegmentationFile side = 0 (left side) or else (right side) mris_calc -o ./tmp.mri_nu_correct.mni.1410486/nu0.mgz ./tmp.mri_nu_correct.mni.1410486/nu0.mgz mul Segmentation fault (core dumped)
Thanks so much in advance for any advice!
Best,
Mark
____________________ Mark Wagshul, PhD Associate Professor Gruss Magnetic Resonance Research Center Albert Einstein College of Medicine Bronx, NY 10461
Ph: 718-430-4011 FAX: 718-430-3399 Email: mark.wagshul@einsteinmed.edumailto:mark.wagshul@einsteinmed.edu
[einstein-logo-rgb] This email message and any accompanying attachments may contain privileged information intended only for the named recipient(s). If you are not the intended recipient(s), you are hereby notified that the dissemination, distribution, and or copying of this message is strictly prohibited. If you receive this message in error, or are not the named recipient(s), please notify the sender at the email address above, delete this email from your computer, and destroy any copies in any form immediately.
