Dear Doug Thank you for your quick response. I got the data from oasis website. How can I get the permission to continue my analysis?
Thanks Duy On Fri, May 26, 2017 at 8:46 PM Douglas Greve greve@nmr.mgh.harvard.edu wrote:
Do you have write permission into that folder?
The surface is just the surface that the annotation is on. Once you have your label, you can use it for thickness
On 5/26/17 3:54 AM, Duy Nguyen wrote:
Dear FreeSurfer experts
I am trying to extract the label using standard aparc.annot and will be using mri_mergelabels to create my own lobes to do GLM fit later on for ROI analysis. However, it shows me the error like this when I check there are the files aparc.annot and the file from surf folder. [toibigi2007@localhost OASIS_Data]$ mri_annotation2label --subject OASIS_0002_MR1 --hemi lh --outdir $SUBJECTS_DIR/OASIS_0002_MR1/label subject = OASIS_0002_MR1 annotation = aparc hemi = lh outdir = /media/3B110EAE3B9DE8E0/OASIS_Data/OASIS_0002_MR1/label surface = white
ERROR: creating directory /media/3B110EAE3B9DE8E0/OASIS_Data/OASIS_0002_MR1/label No such file or directory
One more question is that it says default is "white" surface, but I want to measure the cortical thickness. Can I leave white in like this or do I change into --surf to gray for this?
Thank you and best regards, *--v-- Peace --v--* *Duy Nguyễn * *Biomedical Engineering Department- IU HCMC* *Cell: (+84)909999056* *Email: duy.nguyenbme@gmail.com duy.nguyenbme@gmail.com*
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