External Email - Use Caution
Please try the following with the latest 7.3.2 release if you are not already running 7.3.2. The release page is https://secure-web.cisco.com/1zn1v_OOPT0MJ0XxXSk4mw5hbeQD4yegZ0PSsCscJtOJcyd... the link to the .pkg file is https://secure-web.cisco.com/17qSx4asejqc1SOr4BdhhxtQLAqSTPmbMEBpF2VdcKKTR98... 1) Install the 7.3.2 release listed above. It will be installed as /Applications/freesurfer/7.3.2 2) Open a new terminal window and run the bash shell as, $ arch -arm64 /bin/bash
3) Set FS_LICENSE to point to the license.txt file you downloaded after registering via the online form at https://secure-web.cisco.com/1hvYfe1hO7ZqQEnaogRQmpJSBSH4ZqL7YpQWNvh19EOSXJM... For example, it could be in your home directory as $HOME/license.txt. It can be anywhere but you just have to set FS_LICENSE to its absolute path and test it can be read. $ ls $HOME/license.txt/Users/<your userid>/license.txt$ export FS_LICENSE=$HOME/license.txt$ head -1 $FS_LICENSEyou@youremail.something <— email you used to register with 4) Setup the environment, $ export FREESURFER_HOME=/Applications/freesurfer/7.3.2$ source $FREESURFER_HOME/SetUpFreeSurfer.sh -------- freesurfer-darwin-macOS-7.3.2-20220803-878457d -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer/7.3.2 FSFAST_HOME /Applications/freesurfer/7.3.2/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer/7.3.2/subjects MNI_DIR /Applications/freesurfer/7.3.2/mni
5) Try running freeview from the command line w/o any arguments to see if it opens an empty window, $ freeview 6) If that worked, quit freeview and then run freeview from the command line again to open one of the provided volumes in the 7.3.2 release, $ freeview $SUBJECTS_DIR/bert/mri/brain.mgz 7) If that worked, then try running freeview from the command line on one of your own volume or surface files. - R. On Dec 30, 2022, at 12:55, Seyedeh Nasim Adnani <sza0127@auburn.edu> wrote: External Email - Use Caution Hello, I have a MacBook Pro with Ventura 13.1 OS, 64 GB, SMC Apple M1 Max.I recently started installing the freesurfer software but unfortunately, a simple volume loading into the freeview crashes without displaying any image.I have tried installing various python versions (2,3) and modifying the PATH but nothing seems to help. Now, I wonder if the software is compatible with my mac. Is there any way I can make it work on my system? Many thanks in advance for your help. Best,Nasim Adnani,Sza0127@auburn.edu_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer