Re: [Freesurfer] registration and resampling in native space

Hi Francesca

check out the --no-resample option in mri_vol2vol. It just changes the header, so I think should do what you want.

cheers Bruce

On Tue, 12 Feb 2019, Francesca Strappini wrote:

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Dear Freesurfer's experts,

I would like to register some functional data to the T1, that were collected in separate days. I used bbregister:

bbregister --s sub3 --mov func_data.nii.gz - --reg register.dat --init-coreg --t1

Now, I would like to resample the data based on the register.dat without upsampling and keeping the same FoV (3x3x3 mm; 64 64 50). Is it doable?

Thanks! Best

-- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strappini@weizmann.ac.il