12 Jan
2018
12 Jan
'18
11:21 a.m.
Hi Aicha.
We have a different processing stream for infants. It is not only the skullstripping that will not work for your cases but much of the remaining pipeline. We are getting ready to release that pipeline.
Lilla
On Fri, 12 Jan 2018, Dijkshoorn, A.B.C. (Aicha) wrote:
Dear free surfer developers, Because I work with neonatal scans the skullstrip phase cannot be applied correctly (it removes too much skull). To avoid this problem I added the -noskullstrip option. However, I do still need the brain mask output of this phase. How can I work around this?
Kind regards, Aicha