External Email - Use Caution
Hello,
I am having an issue with the mri_label2label command.
What I did was mri merge of the BA4 a and p labels for each hemisphere from the fsaverage files, ending up with a lh.BA4.label and a rh.BA4.label.
I am wanting to now map the fsaverage lh.BA4.label and rh.BA4.label onto the individual subjects into my study, and was told that to do this, I needed to create those same labels using the BA4 a & p labels in the individual subject label file, and then run the command mri_label2label.
This is the command that I am running:
mri_label2label --srcsubject fsaverage --srclabel lh.BA4.label --trgsubject SRMC01_1.long.SRMC01 --trglabel lh.BA4.label --regmethod surface --hemi lh
And it keeps giving me this error message:
srclabel = lh.BA4.label
srcsubject = fsaverage
trgsubject = SRMC01_1.long.SRMC01
trglabel = lh.BA4.label
regmethod = surface
srchemi = lh
trghemi = lh
trgsurface = white
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
usehash = 1
Use ProjAbs = 0, 0
Use ProjFrac = 0, 0
DoPaint 0
SUBJECTS_DIR ./
FREESURFER_HOME /Applications/freesurfer
Loading source label.
Found 7403 points in source label.
Starting surface-based mapping
Reading source registration
.//fsaverage/surf/lh.sphere.reg
Rescaling ... original radius = 100
Reading target surface
.//SRMC01_1.long.SRMC01/surf/lh.white
MRISread(.//SRMC01_1.long.SRMC01/surf/lh.white): could not open file
No such file or directory
ERROR: could not read .//SRMC01_1.long.SRMC01/surf/lh.white
The lh.white file is definitely in the surface folder under that subject so I'm not sure why is says there is no such file or directory.
Any help would be greatly appreciated!!
Stephanie