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Hello FreeSurfer Developers,
I'm attempting to do group analysis for cortical thickness map using Qdec GUI. We've already have recon-all files that were made by “recon-all –s subjid –i subjid.nii –all” on other Linux OS (freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0)
Firstly, I try to run command “recon-all –s subject –qcache” for each subject floders. However, the program stopped with error 1 minutes after starting. Last line of recon-all.log showed as follows.
#@# Qdec Cache preproc lh white.K fsaverage Thu Dec 20 12:03:25 EST 2018 /Users/emitakahashi/freesurfer/subjects/ASD001/surf \n mris_preproc --s ASD001 --hemi lh --meas white.K --target fsaverage --out lh.white.K.fsaverage.mgh \n nsubjects = 1 ERROR: cannot find /Users/emitakahashi/freesurfer/subjects/ASD001/surf/lh.white.K Darwin emis-mbp.tch.harvard.edu 18.0.0 Darwin Kernel Version 18.0.0: Wed Aug 22 20:13:40 PDT 2018; root:xnu-4903.201.2~1/RELEASE_X86_64 x86_64
I've searched the list but I can find no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use. 1) FreeSurfer version: Free Surfer 6.0 2) Platform: macOS Mojave (64b Intel) 3) recon-all.log: see attached
Tadashi Shiohama