Dear Doug,
I am having a partial field of view and a full brain scan. How can I integrate the results in the preproc-sess sequence in order to complete the preprocessing correctly?
Cheers pfannmoe
On Mon, 04 Jun 2012 11:42:32 -0400 Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
You can try running register-sess outside of preproc-sess, something like register-sess -s session -fsd bold -per-run -init-spm
before you do that, you need to have spm5 and matlab, and change your matlab/startup.m to add the spm5 path path(path,'/usr/pubsw/common/spm/spm5');
doug
ps. Is this whole brain coverage or are you chopping off some of the brain
On 06/04/2012 11:36 AM, Jörg Pfannmöller wrote:
Dear Doug,
indeed the initialization fails. I was able to initiate bbregister manually, giving a good registration result. Can you give me a hint how to modify the registration and keeping the preproc-sess stream intact?
Cheers
pfannmoe
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