Hi,
I am trying to register the spheres to the template. The current version of mris_register may have some nonlinear local deformation of the gyral and sulcal structure. Anyway I can specify the "rigid alignment" only? I didn't find the option for linear alignment only after checking the options of mris_register.
I am using FreeSurfer v4.0.1. Thank you for your help.
XJ Kang
mris_register [options] <input surface> <average surface> <output surface>
Options:
-norot : disable initial rigid alignment -nosulc : disable initial sulc alignment -curv : use smoothwm curvature for final alignment -jacobian <fname> : write-out jacobian overlay data to fname -dist <num> : specify distance term -l <label file> <atlas (*.gcs)> <label name> : this option will specify a manual label to align with atlas label <label name> -addframe <which_field> <where_in_atlas> <l_corr> <l_pcorr> -overlay <surfvals> <navgs> : subject/labels/hemi.surfvals -overlay-dir <dir> : subject/dir/hemi.surfvals -1 : target specifies a subject's surface, not a template file