you need to use the ?h.cortex.label with -l to exclude those areas. On Thu, 30 Sep 2010, Zhang, Yuning wrote:
Does the surface area calculated here include the non-cortical area along the medial wall ?
Thank you very much.
From: Michael Harms [mharms@conte.wustl.edu] Sent: Thursday, September 30, 2010 5:24 PM To: Zhang, Yuning Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] calculate the surface area of pial surface using mris_anatomical_stats
usage: mris_anatomical_stats [options] <subject name> <hemi> [<surface name>]
So, just end your command with the word 'pial'.
cheers, -MH
On Thu, 2010-09-30 at 17:09 +0000, Zhang, Yuning wrote:
Hi,experts,
I am trying to get the total surface area of pial surface using the following command,but it seems the default surface for this command is white matter surface, is there any parameters i could change to get the information from pial surface ?
mris_anatomical_stats -l lh.cortex.label - f /freesurfer/subjects_1/stats/lh.cortext.stats subjects_1 lh
Thanks a lot
best yuning
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