Hi Stephanie
the -so switch requirees a surface and an overlay. What you have given it is an annotation (NOT a surface) and an overlay. Use one of the surfaces instead (e.g. lh.white)
cheers Bruce
On Sun, 9 Dec 2018, Winkelbeiner, Stephanie A wrote:
External Email - Use Caution
Hi Freesurfers,
I’m trying to project the surface, a fine-grained parcellation (?h.250.aparc.annot), into volume space (dti_FA) with
for subj in SPN01*; do
if [ -d "${subj}" ];
then
cd $subj/
mri_surf2vol \
--o FA/annot2FA.nii.gz \
--subject $subj \
--so $SUBJECTS_DIR/$subj/label/lh.250.aparc.annot $dtipath/$subj/dti_FA.nii.gz
cd ../
fi
done
However, I get ERROR: MRISread: file ‘$SUBJECTS_DIR/$subj/label/lh.250.aparc.annot’ has more faces than vertices!
How can I solve this?
Thanks,
Stephanie
Stephanie Winkelbeiner, MSc
Research Coordinator
Psychiatry Research
Zucker Hillside Hospital
75-59 263 Street
Glen Oaks, NY 11004
Tel: (718) 470-4588
Email: swinkelbei@northwell.edu
Northwell Health
Visit us at Northwell.edu
The information contained in this electronic e-mail transmission and any attachments are intended only for the use of the individual or entity to whom or to which it is addressed, and may contain information that is privileged, confidential and exempt from disclosure under applicable law. If the reader of this communication is not the intended recipient, or the employee or agent responsible for delivering this communication to the intended recipient, you are hereby notified that any dissemination, distribution, copying or disclosure of this communication and any attachment is strictly prohibited. If you have received this transmission in error, please notify the sender immediately by telephone and electronic mail, and delete the original communication and any attachment from any computer, server or other electronic recording or storage device or medium. Receipt by anyone other than the intended recipient is not a waiver of any attorney-client, physician-patient or other privilege.